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Lesson Description Beta This lesson is in the beta phase, which means that it is ready for teaching by instructors outside of the original author team.

    Lesson Description
    Pangenome Analysis in Prokaryotes
    • Pangenome Analysis in Prokaryotes
    • Key Points
    • Instructor Notes
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      • Data

      • Discussion
      • Glossary
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    Pangenome Analysis in Prokaryotes
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    Summary and Schedule
    1. Introduction to Pangenomics
    2. Downloading Genomic Data
    3. Annotating Genomic Data
    4. Measuring Sequence Similarity
    5. Clustering with BLAST Results
    6. Clustering Protein Sequences
    7. Exploring Pangenome Graphs
    8. Interactive Pangenome Plots
    9. Other Resources

    • Key Points
    • Instructor Notes
    • Extract All Images
    • Data

    • Discussion
    • Glossary

    See all in one page

    Instructor Notes

    The instructor notes provided for this lesson are described in the Instructor Notes page of the Pangenomics Workshop Overview page under the Extras tab.

    Introduction to Pangenomics


    Downloading Genomic Data


    Annotating Genomic Data


    Measuring Sequence Similarity


    Clustering with BLAST Results


    Clustering Protein Sequences


    Exploring Pangenome Graphs


    Interactive Pangenome Plots


    Other Resources



    This lesson is subject to the Code of Conduct

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    Materials licensed under CC-BY 4.0 by the authors

    Template licensed under CC-BY 4.0 by The Carpentries

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