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Lesson Description DOI: 10.21105/jose.00209

    Lesson Description
    Data Processing and Visualization for Metagenomics
    • Data Processing and Visualization for Metagenomics
    • Key Points
    • Instructor Notes
    • Extract All Images
      • Binning, Refinamiento y Desreplicación
      • Reconstrucción de Genomas a partir de Metagenomas (MAGs)
      • Clasificación taxonómica y Metabolismo
      • Amplicon metagenomics
      • Data

      • Discussion
      • Glossary - Data processing and visualization for metagenomics
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    Data Processing and Visualization for Metagenomics
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    Summary and Schedule
    1. Starting a Metagenomics Project
    2. Assessing Read Quality
    3. Trimming and Filtering
    4. Metagenome Assembly
    5. Metagenome Binning
    6. Taxonomic Assignment
    7. Exploring Taxonomy with R
    8. Diversity Tackled With R
    9. Taxonomic Analysis with R
    10. Other Resources

    • Key Points
    • Instructor Notes
    • Extract All Images
    • Binning, Refinamiento y Desreplicación
    • Reconstrucción de Genomas a partir de Metagenomas (MAGs)
    • Clasificación taxonómica y Metabolismo
    • Amplicon metagenomics
    • Data

    • Discussion
    • Glossary - Data processing and visualization for metagenomics

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    Instructor Notes

    The instructor notes provided for this lesson are described in the Instructor Notes page of the Metagenomics Workshop Overview page under the Extras tab.

    Starting a Metagenomics Project


    Assessing Read Quality


    Trimming and Filtering


    Metagenome Assembly


    Metagenome Binning


    Taxonomic Assignment


    Exploring Taxonomy with R


    Diversity Tackled With R


    Taxonomic Analysis with R


    Other Resources



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